Acknowledgement sent
to Ludovic Courtès <ludovic.courtes@inria.fr>:
New bug report received and forwarded. Copy sent to bug-guix@gnu.org.
(Mon, 13 Sep 2021 13:17:01 GMT) (full text, mbox, link).
Hello,
As of current ‘master’ (ca. ec0e05ff306c950142c9ead7c712c749617069e7),
the following source code is missing (these are fixed-output
derivations):
/gnu/store/3814l5f74b30yy0j84a4wrv8nl16fx26-eye-1.4.1.tar.gz.drv
/gnu/store/fjk0q2ajk3y18yh5ngif8ir14xckxqa5-weightwatcher-1.12.tar.gz.drv
/gnu/store/syndcxqrzqph12k22y5x6i454jajjw00-skymaker-3.10.5.tar.gz.drv
/gnu/store/ginlb786zg4kqnzvxxfh8qx7wqajhl10-stuff-1.26.0.tar.gz.drv
/gnu/store/hkgpygplymyyaifk6pmvs2cvmkmfhpkq-clusterProfiler_4.0.4.tar.gz.drv
/gnu/store/ghg86w6i14jkrq8nvcazr7pvxz8i82s2-ggtree_3.0.3.tar.gz.drv
/gnu/store/prbkg6vldsh1688fsigr33g4s8qla7rl-propeller-gcc-b4f45a4725e0b6d0af59e594c4e3e35ca4105867-checkout.drv
These two fail to build with a hash mismatch error:
/gnu/store/v1h0djr2daz1ymmsb7043r79llcdamxa-canada1500.zip.drv
/gnu/store/gj7g1hxjja58shki02hcdpbahrxwbcjr-texlive-marginnote-51265-checkout.drv
If you know how to retrieve them, please share!
Ludo’.
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Mon, 13 Sep 2021 13:50:02 GMT) (full text, mbox, link).
Ludo',
I'm afraind I only have:
Ludovic Courtès 写道：
> /gnu/store/prbkg6vldsh1688fsigr33g4s8qla7rl-propeller-gcc-b4f45a4725e0b6d0af59e594c4e3e35ca4105867-checkout.drv
Let me know where & how to send it.
Kind regards,
T G-R
Tobias Geerinckx-Rice via Bug reports for GNU Guix 写道：
> /gnu/store/prbkg6vldsh1688fsigr33g4s8qla7rl-propeller-gcc-b4f45a4725e0b6d0af59e594c4e3e35ca4105867-checkout.drv
FTR, I don't think this one's actually down.
Kind regards,
T G-R
Hi,
Maxime Devos <maximedevos@telenet.be> skribis:
> The Wayback Machine has some copies of software at https://www.atromatic.net:
Thanks, they’re now all in store on berlin.
It’s kinda ironic that it’s the Wayback Machine that’s saving us here…
I wonder if there’s a way to construct generic web.archive.org URLs that
we could use as a fallback in (guix build download)?
Thanks,
Ludo’.
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Tue, 14 Sep 2021 08:41:02 GMT) (full text, mbox, link).
Tobias Geerinckx-Rice <me@tobias.gr> skribis:
> Tobias Geerinckx-Rice via Bug reports for GNU Guix 写道：
>> /gnu/store/prbkg6vldsh1688fsigr33g4s8qla7rl-propeller-gcc-b4f45a4725e0b6d0af59e594c4e3e35ca4105867-checkout.drv
>
> FTR, I don't think this one's actually down.
Oops, indeed, this one’s available.
Thanks,
Ludo’.
Severity set to 'important' from 'normal'
Request was from Ludovic Courtès <ludo@gnu.org>
to control@debbugs.gnu.org.
(Tue, 14 Sep 2021 08:42:01 GMT) (full text, mbox, link).
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Tue, 14 Sep 2021 08:56:02 GMT) (full text, mbox, link).
Cc: Maxime Devos <maximedevos@telenet.be>, 50568@debbugs.gnu.org
Subject: Re: bug#50568: Missing source code
Date: Tue, 14 Sep 2021 10:54:52 +0200
Hi,
On Tue, 14 Sept 2021 at 10:40, Ludovic Courtès <ludo@gnu.org> wrote:
> Thanks, they’re now all in store on berlin.
Do we do the usual trick to save them on SWH?
> It’s kinda ironic that it’s the Wayback Machine that’s saving us here…
> I wonder if there’s a way to construct generic web.archive.org URLs that
> we could use as a fallback in (guix build download)?
That would help, I guess. :-)
Cheers,
simon
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Tue, 14 Sep 2021 09:37:01 GMT) (full text, mbox, link).
Cc: Maxime Devos <maximedevos@telenet.be>, 50568@debbugs.gnu.org
Subject: Re: bug#50568: Missing source code
Date: Tue, 14 Sep 2021 11:36:10 +0200
On Tue, Sep 14, 2021 at 10:38:55AM +0200, Ludovic Courtès wrote:
> Hi,
>
> Maxime Devos <maximedevos@telenet.be> skribis:
>
> > The Wayback Machine has some copies of software at https://www.atromatic.net:
>
> Thanks, they’re now all in store on berlin.
>
> It’s kinda ironic that it’s the Wayback Machine that’s saving us here…
> I wonder if there’s a way to construct generic web.archive.org URLs that
> we could use as a fallback in (guix build download)?
AFAIK Just replace the date in
On Mon, Sep 13, 2021 at 03:49:05PM +0200, Maxime Devos wrote:
> https://web.archive.org/web/20161204140455/https://www.astromatic.net/download/stuff/stuff-1.26.0.tar.gz
by the current time.
Regards,
Florian
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Thu, 16 Sep 2021 19:29:01 GMT) (full text, mbox, link).
Cc: Maxime Devos <maximedevos@telenet.be>, 50568@debbugs.gnu.org
Subject: Re: bug#50568: Missing source code
Date: Thu, 16 Sep 2021 21:28:02 +0200
Hi,
zimoun <zimon.toutoune@gmail.com> skribis:
> On Tue, 14 Sept 2021 at 10:40, Ludovic Courtès <ludo@gnu.org> wrote:
>
>> Thanks, they’re now all in store on berlin.
>
> Do we do the usual trick to save them on SWH?
I think their contents are already saved on berlin, just not the
tarballs themselves.
For example:
--8<---------------cut here---------------start------------->8---
$ guix download https://web.archive.org/web/20161204140455/https://www.astromatic.net/download/stuff/stuff-1.26.0.tar.gz
Starting download of /tmp/guix-file.HTtGKM
From https://web.archive.org/web/20161204140455/https://www.astromatic.net/download/stuff/stuff-1.26.0.tar.gz...
…6.0.tar.gz 163KiB/s 00:25 | 3.9MiB transferred
/gnu/store/l3r5j8r4f6fh6bxa9va3681n3bclxpdq-stuff-1.26.0.tar.gz
1syibi3b86z9pikhicvkkmgxm916j732fdiw0agw0lq6z13fdcjm
$ guix environment --ad-hoc disarchive -- disarchive disassemble /gnu/store/l3r5j8r4f6fh6bxa9va3681n3bclxpdq-stuff-1.26.0.tar.gz |grep swhid
(swhid "swh:1:dir:128bbe76a82dd0b38b725565ed703a7148257ae0"))
--8<---------------cut here---------------end--------------->8---
and:
--8<---------------cut here---------------start------------->8---
scheme@(guile-user)> ,use(guix swh)
scheme@(guile-user)> (lookup-directory "128bbe76a82dd0b38b725565ed703a7148257ae0")
$24 = #f
--8<---------------cut here---------------end--------------->8---
Hmm actually maybe they vanished before they got a chance to be
archived?
Ludo’.
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Thu, 16 Sep 2021 19:47:01 GMT) (full text, mbox, link).
Cc: Maxime Devos <maximedevos@telenet.be>, 50568@debbugs.gnu.org
Subject: Re: bug#50568: Missing source code
Date: Fri, 17 Sep 2021 12:10:19 +0200
Hi,
On Thu, 16 Sept 2021 at 21:28, Ludovic Courtès <ludo@gnu.org> wrote:
> zimoun <zimon.toutoune@gmail.com> skribis:
> > On Tue, 14 Sept 2021 at 10:40, Ludovic Courtès <ludo@gnu.org> wrote:
> >
> >> Thanks, they’re now all in store on berlin.
> >
> > Do we do the usual trick to save them on SWH?
>
> I think their contents are already saved on berlin, just not the
> tarballs themselves.
I mean, download the tarball from Berlin, then turn locally the source
to a Git source, archive it on SWH.
As it had been done for guile-dbi for instance.
> Hmm actually maybe they vanished before they got a chance to be
> archived?
Probably. One thing that I have on my TODO is to write a sources.json
with all the source Berlin has. Or as a start add the URL of Berlin
as "mirror".
Cheers,
simon
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Fri, 17 Sep 2021 10:48:02 GMT) (full text, mbox, link).
Cc: Maxime Devos <maximedevos@telenet.be>, 50568@debbugs.gnu.org
Subject: Re: bug#50568: Missing source code
Date: Fri, 17 Sep 2021 12:46:50 +0200
On Tue, Sep 14, 2021 at 10:38:55AM +0200, Ludovic Courtès wrote:
> I wonder if there’s a way to construct generic web.archive.org URLs that
> we could use as a fallback in (guix build download)?
On Thu, Sep 16, 2021 at 09:45:26PM +0200, Ludovic Courtès wrote:
> How ’bout the attached patch? Works for me.
Thank you for implementing. I guix pull with the patch applied, add the IP
from
guix environment --ad-hoc bind:utils -- dig web.archive.org
to /etc/hosts, set my DNS server to a non-existing 10.0.0.50, disable
IPv6, then “sudo herd stop nscd”, re-connect Network Manager (ping
gnu.org fails now) and LC_ALL=en_US.utf8 guix install hello. It
fails. Did I misunderstand the patch’s purpose or test in a wrong
way? This is the output:
florian@florianacer ~$ LC_ALL=en_US.utf8 guix install hello
The following package will be installed:
hello 2.10
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 0.0%guix substitute: warning: ci.guix.gnu.org: host not found: Temporary failure in name resolution
substitute:
substitute: updating substitutes from 'https://bordeaux.guix.gnu.org'... 0.0%guix substitute: warning: bordeaux.guix.gnu.org: host not found: Temporary failure in name resolution
substitute:
The following derivations will be built:
/gnu/store/4hsqwl19n4m2scipkzy0rsc04n30vhbk-profile.drv
/gnu/store/xr30pd6zw8lp0xz3kq2d7gm3c8pmh674-hello-2.10.drv
/gnu/store/wy24jyd0mm2jlgpzsxxlip03df065g35-hello-2.10.tar.gz.drv
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 0.0%
substitute: updating substitutes from 'https://bordeaux.guix.gnu.org'... 0.0%
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 0.0%
substitute: updating substitutes from 'https://bordeaux.guix.gnu.org'... 0.0%
applying 5 grafts for /gnu/store/rsizfxkag8gkbccr5d4g9xdacgwh8wya-at-spi2-core-2.34.0.drv ...
building /gnu/store/wy24jyd0mm2jlgpzsxxlip03df065g35-hello-2.10.tar.gz.drv...
\builder for `/gnu/store/wy24jyd0mm2jlgpzsxxlip03df065g35-hello-2.10.tar.gz.drv' failed to produce output path `/gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz'
build of /gnu/store/wy24jyd0mm2jlgpzsxxlip03df065g35-hello-2.10.tar.gz.drv failed
View build log at '/var/log/guix/drvs/wy/24jyd0mm2jlgpzsxxlip03df065g35-hello-2.10.tar.gz.drv.bz2'.
applying 4 grafts for /gnu/store/8jj80f4p5bp9s09zawxmli13chrdx2ri-at-spi2-atk-2.34.1.drv ...
cannot build derivation `/gnu/store/xr30pd6zw8lp0xz3kq2d7gm3c8pmh674-hello-2.10.drv': 1 dependencies couldn't be built
cannot build derivation `/gnu/store/4hsqwl19n4m2scipkzy0rsc04n30vhbk-profile.drv': 1 dependencies couldn't be built
guix install: error: build of `/gnu/store/4hsqwl19n4m2scipkzy0rsc04n30vhbk-profile.drv' failed
florian@florianacer ~$ bzcat /var/log/guix/drvs/wy/24jyd0mm2jlgpzsxxlip03df065g35-hello-2.10.tar.gz.drv.bz2
Starting download of /gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz
From https://ftpmirror.gnu.org/gnu/hello/hello-2.10.tar.gz...
In procedure getaddrinfo: Temporary failure in name resolution
Starting download of /gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz
From ftp://ftp.cs.tu-berlin.de/pub/gnu/hello/hello-2.10.tar.gz...
In procedure getaddrinfo: Temporary failure in name resolution
Starting download of /gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz
From ftp://ftp.funet.fi/pub/mirrors/ftp.gnu.org/gnu/hello/hello-2.10.tar.gz...
In procedure getaddrinfo: Temporary failure in name resolution
Starting download of /gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz
From http://ftp.gnu.org/pub/gnu/hello/hello-2.10.tar.gz...
In procedure getaddrinfo: Temporary failure in name resolution
Starting download of /gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz
From https://ci.guix.gnu.org/file/hello-2.10.tar.gz/sha256/0ssi1wpaf7plaswqqjwigppsg5fyh99vdlb9kzl7c9lng89ndq1i...
In procedure getaddrinfo: Temporary failure in name resolution
Starting download of /gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz
From https://tarballs.nixos.org/sha256/0ssi1wpaf7plaswqqjwigppsg5fyh99vdlb9kzl7c9lng89ndq1i...
In procedure getaddrinfo: Temporary failure in name resolution
Starting download of /gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz
From https://archive.softwareheritage.org/api/1/content/sha256:31e066137a962676e89f69d1b65382de95a7ef7d914b8cb956f41ea72e0f516b/raw/...
In procedure getaddrinfo: Temporary failure in name resolution
Trying to use Disarchive to assemble /gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz...
In procedure getaddrinfo: Temporary failure in name resolution
could not find its Disarchive specification
failed to download "/gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz" from "mirror://gnu/hello/hello-2.10.tar.gz"
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Mon, 20 Sep 2021 07:26:02 GMT) (full text, mbox, link).
To: "pelzflorian (Florian Pelz)" <pelzflorian@pelzflorian.de>
Cc: Maxime Devos <maximedevos@telenet.be>, 50568@debbugs.gnu.org
Subject: Re: bug#50568: Missing source code
Date: Mon, 20 Sep 2021 09:25:27 +0200
Hi Florian,
"pelzflorian (Florian Pelz)" <pelzflorian@pelzflorian.de> skribis:
> On Tue, Sep 14, 2021 at 10:38:55AM +0200, Ludovic Courtès wrote:
>> I wonder if there’s a way to construct generic web.archive.org URLs that
>> we could use as a fallback in (guix build download)?
> On Thu, Sep 16, 2021 at 09:45:26PM +0200, Ludovic Courtès wrote:
>> How ’bout the attached patch? Works for me.
>
> Thank you for implementing. I guix pull with the patch applied, add the IP
> from
>
> guix environment --ad-hoc bind:utils -- dig web.archive.org
>
> to /etc/hosts, set my DNS server to a non-existing 10.0.0.50, disable
> IPv6, then “sudo herd stop nscd”, re-connect Network Manager (ping
> gnu.org fails now) and LC_ALL=en_US.utf8 guix install hello. It
> fails. Did I misunderstand the patch’s purpose or test in a wrong
> way? This is the output:
The thing is that this code is used by the internal ‘guix
perform-download’ command, invoked by ‘guix-daemon’ when performing a
source download. Thus, since you were still running the old daemon, you
were using code lacking the Internet Archive fallback.
To test it, you can first start the new daemon, along these lines:
sudo herd stop guix-daemon
sudo -E ./pre-inst-env guix-daemon --build-users-group=guixbuild
Another option is to call ‘url-fetch’ manually at the REPL.
Thanks for testing!
Ludo’.
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Tue, 21 Sep 2021 10:30:02 GMT) (full text, mbox, link).
Cc: Maxime Devos <maximedevos@telenet.be>, 50568@debbugs.gnu.org
Subject: Re: bug#50568: Missing source code
Date: Tue, 21 Sep 2021 12:28:50 +0200
On Mon, Sep 20, 2021 at 09:25:27AM +0200, Ludovic Courtès wrote:
> The thing is that this code is used by the internal ‘guix
> perform-download’ command, invoked by ‘guix-daemon’ when performing a
> source download.
Thank you for enlightening me; I had not expected guix-daemon.
Success! After
./bootstrap
./configure --localstatedir=/var
make
GUIX_ALLOW_ME_TO_USE_PRIVATE_COMMIT=y make update-guix-package
and git commit -a, guix pull, reconfigure and reboot, your
web.archive.org patch downloads from web.archive.org with the steps
from before:
"pelzflorian (Florian Pelz)" <pelzflorian@pelzflorian.de> skribis:
> I guix pull with the patch applied, add the IP from
>
> guix environment --ad-hoc bind:utils -- dig web.archive.org
>
> to /etc/hosts, set my DNS server to a non-existing 10.0.0.50, disable
> IPv6, then “sudo herd stop nscd”, re-connect Network Manager (ping
> gnu.org fails now) and LC_ALL=en_US.utf8 guix install hello.
/var/log/guix/drvs/wy/24jyd0mm2jlgpzsxxlip03df065g35-hello-2.10.tar.gz.drv.bz2
says after various failures in name resolution it got downloaded from
web.archive.org. I enjoy GNU Hello now. Thank you for making
reproducibility easier.
> To test it, you can first start the new daemon, along these lines:
>
> sudo herd stop guix-daemon
> sudo -E ./pre-inst-env guix-daemon --build-users-group=guixbuild
No, going back one generation and guix gc -D’ing the
/gnu/store/*hello-2.10* after adding web.archive.org to /etc/hosts
again, I for some reason get a
florian@florianacer ~$ bzcat /var/log/guix/drvs/wy/24jyd0mm2jlgpzsxxlip03df065g35-hello-2.10.tar.gz.drv.bz2
error: failed to run download program '/home/florian/src/guix/scripts/guix': Keine Berechtigung
(Keine Berechtigung is German for Permission denied) but it does not
matter, since the reconfigure and reboot works when and only when
adding web.archive.org to /etc/hosts.
Actually I will later take another look at this, because the manual
says ./pre-inst-env guix-daemon should work.
> Another option is to call ‘url-fetch’ manually at the REPL.
This I didn’t try.
Regards,
Florian
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Tue, 21 Sep 2021 16:35:01 GMT) (full text, mbox, link).
On Tue, Sep 21, 2021 at 12:28:50PM +0200, pelzflorian (Florian Pelz) wrote:
> On Mon, Sep 20, 2021 at 09:25:27AM +0200, Ludovic Courtès wrote:
> > To test it, you can first start the new daemon, along these lines:
> >
> > sudo herd stop guix-daemon
> > sudo -E ./pre-inst-env guix-daemon --build-users-group=guixbuild
>
> No, going back one generation and guix gc -D’ing the
> /gnu/store/*hello-2.10* after adding web.archive.org to /etc/hosts
> again, I for some reason get a
>
> florian@florianacer ~$ bzcat /var/log/guix/drvs/wy/24jyd0mm2jlgpzsxxlip03df065g35-hello-2.10.tar.gz.drv.bz2
> error: failed to run download program '/home/florian/src/guix/scripts/guix': Keine Berechtigung
>
> (Keine Berechtigung is German for Permission denied) but it does not
> matter, since the reconfigure and reboot works when and only when
> adding web.archive.org to /etc/hosts.
>
> Actually I will later take another look at this, because the manual
> says ./pre-inst-env guix-daemon should work.
There is no regression. Without the web.archive.org patch,
`guix install hello' via
sudo -E ./pre-inst-env guix-daemon --build-users-group=guixbuild
always shows the same error, regardless of whether I misdirected DNS
lookups or not. The patch is not at fault. Though I don’t know why.
sudo -E strace -f ./pre-inst-env guix-daemon --build-users-group=guixbuild
shows
[pid 1854] execve("/home/florian/src/guix/scripts/guix", ["guix", "perform-download", "/gnu/store/wy24jyd0mm2jlgpzsxxli"..., "/gnu/store/hbdalsf5lpf01x4dcknwx"...], 0x1d8f9a0 /* 80 vars */) = -1 EACCES (Keine Berechtigung)
<https://pubs.opengroup.org/onlinepubs/9699919799/> says:
> The exec functions shall fail if:
> …
> [EACCES]
> The new process image file is not a regular file and the implementation does not support execution of files of its type.
> The exec functions, except for fexecve(), shall fail if:
> [EACCES]
> Search permission is denied for a directory listed in the new process image file's path prefix, or the new process image file denies execution permission.
I run:
florian@florianacer ~$ ls -ahl /home/florian/src/guix/scripts/guix
-r-xr-xr-x 1 florian users 2,0K 21. Sep 07:30 /home/florian/src/guix/scripts/guix
florian@florianacer ~$ ls -ahl /home/florian/src/guix | grep scripts
drwxr-xr-x 2 florian users 4,0K 21. Sep 07:30 scripts/
florian@florianacer ~$ lsattr /home/florian/src/guix/scripts/guix
--------------e----- /home/florian/src/guix/scripts/guix
florian@florianacer ~ [env]$ cat test-execv.c
#include <unistd.h>
int main ()
{
const char *const argv[] =
{
"guix", "perform-download",
"/gnu/store/wy24jyd0mm2jlgpzsxxlip03df065g35-hello-2.10.tar.gz.drv",
"/gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz.lock",
NULL
};
execv ("/home/florian/src/guix/scripts/guix", (char *const *) argv);
return 0;
}
florian@florianacer ~ [env]$ gcc test-execv.c -o test-execv
florian@florianacer ~ [env]$ LC_ALL=en_US.utf8 ~/test-execv
Starting download of /gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz.lock
From https://ftpmirror.gnu.org/gnu/hello/hello-2.10.tar.gz...
following redirection to `https://ftp.wayne.edu/gnu/hello/hello-2.10.tar.gz'...
In procedure open-file: Read-only file system: "/gnu/store/hbdalsf5lpf01x4dcknwx6xbn6n5km6k-hello-2.10.tar.gz.lock"
[and more expected failures …]
Whatever. It is not important.
Regards,
Florian
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Wed, 22 Sep 2021 09:38:02 GMT) (full text, mbox, link).
To: "pelzflorian (Florian Pelz)" <pelzflorian@pelzflorian.de>
Cc: Maxime Devos <maximedevos@telenet.be>, 50568@debbugs.gnu.org
Subject: Re: bug#50568: Missing source code
Date: Wed, 22 Sep 2021 11:37:07 +0200
Hi!
"pelzflorian (Florian Pelz)" <pelzflorian@pelzflorian.de> skribis:
> On Mon, Sep 20, 2021 at 09:25:27AM +0200, Ludovic Courtès wrote:
>> The thing is that this code is used by the internal ‘guix
>> perform-download’ command, invoked by ‘guix-daemon’ when performing a
>> source download.
>
> Thank you for enlightening me; I had not expected guix-daemon.
>
> Success! After
>
> ./bootstrap
> ./configure --localstatedir=/var
> make
> GUIX_ALLOW_ME_TO_USE_PRIVATE_COMMIT=y make update-guix-package
>
> and git commit -a, guix pull, reconfigure and reboot, your
> web.archive.org patch downloads from web.archive.org with the steps
> from before:
That’s a heavy test, but great that it works as intended. I’ll push it
soonish.
> florian@florianacer ~$ bzcat /var/log/guix/drvs/wy/24jyd0mm2jlgpzsxxlip03df065g35-hello-2.10.tar.gz.drv.bz2
> error: failed to run download program '/home/florian/src/guix/scripts/guix': Keine Berechtigung
That is weird indeed.
Thanks for testing!
Ludo’.
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Mon, 04 Oct 2021 20:06:01 GMT) (full text, mbox, link).
Hi!
Ludovic Courtès <ludovic.courtes@inria.fr> skribis:
> As of current ‘master’ (ca. ec0e05ff306c950142c9ead7c712c749617069e7),
> the following source code is missing (these are fixed-output
> derivations):
We now have ‘etc/source-manifest.scm’, meaning one can run¹:
guix weather -m etc/source-manifest.scm
This manifest is now built at ci.guix.gnu.org:
https://ci.guix.gnu.org/jobset/source
… which gives us a good overview of currently missing/mismatching
source:
https://ci.guix.gnu.org/eval/27221?status=failed
So far 27 failures out of 16,315, roughly 0.2%.
If you have copies of the missing/modified files that show up there,
please share.
Ludo’.
¹ https://lists.gnu.org/archive/html/guix-devel/2021-09/msg00174.html
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Tue, 05 Oct 2021 14:28:01 GMT) (full text, mbox, link).
Ludovic Courtès <ludo@gnu.org> skribis:
> Ludovic Courtès <ludovic.courtes@inria.fr> skribis:
>
>> As of current ‘master’ (ca. ec0e05ff306c950142c9ead7c712c749617069e7),
>> the following source code is missing (these are fixed-output
>> derivations):
>
> We now have ‘etc/source-manifest.scm’, meaning one can run:
>
> guix weather -m etc/source-manifest.scm
>
> This manifest is now built at ci.guix.gnu.org:
>
> https://ci.guix.gnu.org/jobset/source
>
> … which gives us a good overview of currently missing/mismatching
> source:
>
> https://ci.guix.gnu.org/eval/27221?status=failed
>
> So far 27 failures out of 16,315, roughly 0.2%.
>
> If you have copies of the missing/modified files that show up there,
> please share.
Hi,
I have the following ones in the store:
- cl-gserver-1.8.0-checkout
- gnu-standards-2020-11-25-checkout
- golden-utils-0.0.0-3.fe1898f-checkout
- xorg-server_1.20.10-3.diff.gz
The attached archive contains the nars made with:
--8<---------------cut here---------------start------------->8---
guix archive --export /gnu/store/...
--8<---------------cut here---------------end--------------->8---
The signing key of the machine is:
--8<---------------cut here---------------start------------->8---
(public-key
(ecc
(curve Ed25519)
(q #988123DC42F034138C30903B80A78A6DC8B975A20D891D8DC3DD3CC4308D0D08#)))
--8<---------------cut here---------------end--------------->8---
Hi Guillaume,
Guillaume Le Vaillant <glv@posteo.net> skribis:
> I have the following ones in the store:
Thanks! I’ve been able to address these in several ways:
> - cl-gserver-1.8.0-checkout
commit f7f036e7c369515ad678cc08dd5bc9e254804d38 (do take a look at
the comment in that commit…)
> - gnu-standards-2020-11-25-checkout
CVS doesn’t go through the firewall at berlin, so I manually added it
to the store (not great).
> - golden-utils-0.0.0-3.fe1898f-checkout
commit ef93b238f64c1a27270cae78772b60d63088a026
> - xorg-server_1.20.10-3.diff.gz
manually added to the store; problem is that this file has disappeared
upstream, AFAICS, so it would be best to change this package
definition, possibly adding copy of the diff.gz file to the repo?
Ludo’.
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Thu, 07 Oct 2021 13:54:02 GMT) (full text, mbox, link).
Ludovic Courtès <ludo@gnu.org> skribis:
> https://ci.guix.gnu.org/eval/27221?status=failed
We’re left with the following missing bioconductor.org tarballs:
AnnotationFuncs_1.40.0.tar.gz
AneuFinderData_1.18.0.tar.gz
BiocCaseStudies_1.52.0.tar.gz
chromstaRData_1.16.0.tar.gz
genomationData_1.22.0.tar.gz
and a hash mismatch for:
texlive-marginnote-51265-checkout
Zimoun, Ricardo: do you know how to address the bioconductor.org issue?
Ricardo: do you still have a copy of texlive-marginnote-51265-checkout
with the hash as it currently appears on master? We’ll probably end up
just updating the hash, but it’d be nice to check the differences.
Once we’re done with those, we’ll have 100% source coverage on ci.guix.
At that point, we can start building Disarchive metadata.
TIA!
Ludo’.
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Thu, 07 Oct 2021 15:18:02 GMT) (full text, mbox, link).
Ludovic Courtès schreef op do 07-10-2021 om 15:53 [+0200]:
> Ludovic Courtès <ludo@gnu.org> skribis:
>
> > https://ci.guix.gnu.org/eval/27221?status=failed
>
> We’re left with the following missing bioconductor.org tarballs:
>
> AnnotationFuncs_1.40.0.tar.gz
> AneuFinderData_1.18.0.tar.gz
> BiocCaseStudies_1.52.0.tar.gz
> chromstaRData_1.16.0.tar.gz
> genomationData_1.22.0.tar.gz
Running "guix build --source r-annotationfuncs r-aneufinderdata r-bioccasestudies r-chromstardata r-genomationdata"
succeeds on my computer. They are downloaded from bayfront.guix.gnu.org.
Greetings,
Maxime
Maxime Devos <maximedevos@telenet.be> skribis:
> Ludovic Courtès schreef op do 07-10-2021 om 15:53 [+0200]:
>> Ludovic Courtès <ludo@gnu.org> skribis:
>>
>> > https://ci.guix.gnu.org/eval/27221?status=failed
>>
>> We’re left with the following missing bioconductor.org tarballs:
>>
>> AnnotationFuncs_1.40.0.tar.gz
>> AneuFinderData_1.18.0.tar.gz
>> BiocCaseStudies_1.52.0.tar.gz
>> chromstaRData_1.16.0.tar.gz
>> genomationData_1.22.0.tar.gz
>
> Running "guix build --source r-annotationfuncs r-aneufinderdata r-bioccasestudies r-chromstardata r-genomationdata"
> succeeds on my computer. They are downloaded from bayfront.guix.gnu.org.
Indeed, fixed!
Currently bayfront.guix.gnu.org doesn’t run ‘guix publish’, so it
doesn’t support the /file URL scheme, which means I had to do this
manually. We’ll fix it!
Ludo’.
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Mon, 11 Oct 2021 09:56:01 GMT) (full text, mbox, link).
Hi Ludo,
On Thu, 7 Oct 2021 at 15:53, Ludovic Courtès <ludo@gnu.org> wrote:
>
> Ludovic Courtès <ludo@gnu.org> skribis:
>
> > https://ci.guix.gnu.org/eval/27221?status=failed
>
> We’re left with the following missing bioconductor.org tarballs:
>
> AnnotationFuncs_1.40.0.tar.gz
I pick this one. Cuirass says Succeeded with the log:
https://ci.guix.gnu.org/build/1000819/log/raw
Well, I do not know what is this 141.80.167.131 IP address. Something
related to Bayfront, right?
> AneuFinderData_1.18.0.tar.gz
> BiocCaseStudies_1.52.0.tar.gz
> chromstaRData_1.16.0.tar.gz
> genomationData_1.22.0.tar.gz
> Zimoun, Ricardo: do you know how to address the bioconductor.org issue?
From the evaluation you mention above, all these had succeeded. Could
you confirm it is fine?
BTW, for the interested reader, I would like to point this bug#39885
[1] about Bioconductor, URI, fallback and time-machine which appears
to me related. In addition to the two options proposed, another one
not listed but discussed elsewhere is to switch Bioconductor packages
from url-fetch to git-fecth.
1: <http://issues.guix.gnu.org/issue/39885>
All the best,
simoon
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Tue, 12 Oct 2021 09:51:02 GMT) (full text, mbox, link).
Hi,
zimoun <zimon.toutoune@gmail.com> skribis:
> On Thu, 7 Oct 2021 at 15:53, Ludovic Courtès <ludo@gnu.org> wrote:
>>
>> Ludovic Courtès <ludo@gnu.org> skribis:
>>
>> > https://ci.guix.gnu.org/eval/27221?status=failed
>>
>> We’re left with the following missing bioconductor.org tarballs:
>>
>> AnnotationFuncs_1.40.0.tar.gz
>
> I pick this one. Cuirass says Succeeded with the log:
>
> https://ci.guix.gnu.org/build/1000819/log/raw
>
> Well, I do not know what is this 141.80.167.131 IP address. Something
> related to Bayfront, right?
>
>
>> AneuFinderData_1.18.0.tar.gz
>> BiocCaseStudies_1.52.0.tar.gz
>> chromstaRData_1.16.0.tar.gz
>> genomationData_1.22.0.tar.gz
>
>> Zimoun, Ricardo: do you know how to address the bioconductor.org issue?
>
> From the evaluation you mention above, all these had succeeded. Could
> you confirm it is fine?
It is: I fetched copies from bayfront, IIRC.
> BTW, for the interested reader, I would like to point this bug#39885
> [1] about Bioconductor, URI, fallback and time-machine which appears
> to me related. In addition to the two options proposed, another one
> not listed but discussed elsewhere is to switch Bioconductor packages
> from url-fetch to git-fecth.
>
> 1: <http://issues.guix.gnu.org/issue/39885>
Very relevant! How can we avoid those brittle bioconductor.org URLs?
Thanks,
Ludo’.
Information forwarded
to bug-guix@gnu.org: bug#50568; Package guix.
(Tue, 12 Oct 2021 11:18:02 GMT) (full text, mbox, link).
Hi,
On Tue, 12 Oct 2021 at 11:50, Ludovic Courtès <ludo@gnu.org> wrote:
>> BTW, for the interested reader, I would like to point this bug#39885
>> [1] about Bioconductor, URI, fallback and time-machine which appears
>> to me related. In addition to the two options proposed, another one
>> not listed but discussed elsewhere is to switch Bioconductor packages
>> from url-fetch to git-fecth.
>>
>> 1: <http://issues.guix.gnu.org/issue/39885>
>
> Very relevant! How can we avoid those brittle bioconductor.org URLs?
By addressing the mentioned bug. ;-) Do not hold your breath, it is low
in my TODO list. The next Bioconductor release v3.14 is planned for
Wednesday October 27. Therefore, let make it happens for v3.15. :-)
Cheers,
simon
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