(address . guix-patches@gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
363c8d863b0105d719b128bbd0176cb5c6dd994d.1736438970.git.navid.afkhami@mdc-berlin.de
* gnu/packages/bioinformatics.scm (python-ngesh): New variable.
Change-Id: If51f3075037647e319efa9468331677a845b30cb
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
Toggle diff (42 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 34a39a48f1..f524b53bad 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2880,6 +2880,33 @@ (define-public python-metacells
cells).")
(license license:expat)))
+(define-public python-ngesh
+ (package
+ (name "python-ngesh")
+ (version "1.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/tresoldi/ngesh")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "07sj4x95b5hvx57pw24f80sk4ag4hkg1z6wzym3pzi8n5gn85n1z"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-ete3 python-numpy python-six))
+ (native-inputs (list python-black python-flake8 python-pytest python-twine
+ python-wheel))
+ (home-page "https://github.com/tresoldi/ngesh")
+ (synopsis "Library for phylogenetic tree simulation")
+ (description
+ "Ngesh is a Python library and CLI tool for simulating phylogenetic trees and data.
+It is intended for benchmarking phylogenetic methods, especially in historical
+linguistics andstemmatology. The generation of stochastic phylogenetic trees
+also goes by the name simulationmethods for phylogenetic trees, synthetic data
+generation, or just phylogenetic tree simulation.")
+ (license license:expat)))
+
(define-public python-parabam
(package
(name "python-parabam")
base-commit: 66a1a1fe22aff54973ab5c33957a338b33b8274c
--
2.43.0