(address . guix-patches@gnu.org)
20221113054308.5582-1-madalinionel.patrascu@mdc-berlin.de
* gnu/packages/python-xyz.scm (python-synapseclient): New variable.
---
gnu/packages/python-xyz.scm | 60 +++++++++++++++++++++++++++++++++++++
1 file changed, 60 insertions(+)
Toggle diff (75 lines)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index e26656fa32..b599a2e4ed 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -10383,6 +10383,66 @@ (define-public python-sympy
as possible in order to be comprehensible and easily extensible.")
(license license:bsd-3)))
+(define-public python-synapseclient
+ (package
+ (name "python-synapseclient")
+ (version "2.7.0")
+ (source (origin
+ ;; git version contains tests
+ (method git-fetch)
+ (uri (git-reference
+ (url
+ "https://github.com/Sage-Bionetworks/synapsePythonClient")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0v2yyjpmxlxmbn1xbxzx1l1bs45ir9p4i51dlf847irnrrmifxcd"))))
+ ;;(method url-fetch)
+ ;;(uri (pypi-uri "synapseclient" version))
+ ;;(sha256
+ ;; (base32
+ ;; "1g2n5bbq5vkvprk4ap3sbz2q39cjwl8igy3krlskg34c1q7if7r4"))))
+ (build-system python-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'relax-version-requirements
+ (lambda _
+ (substitute* "setup.py"
+ (("keyring>=15,<23\\.5") "keyring>=15")
+ (("keyrings\\.alt==3\\.1") "keyrings.alt>=3.1"))))
+ (add-before 'build 'set-homeless-shelter
+ (lambda _
+ ;; could not create '/homeless-shelter': Permission denied
+ (setenv "HOME" "/tmp")))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ ;; these tests require server authentification SynapseNoCredentialsError
+ (delete-file-recursively "tests/integration/synapseclient")
+ (delete-file-recursively "tests/integration/synapseutils")
+ (invoke "pytest")))))))
+ (propagated-inputs
+ (list python-deprecated
+ python-keyring
+ python-keyrings.alt
+ python-requests))
+ (native-inputs
+ (list python-boto3
+ python-flake8-3.8
+ python-pandas
+ python-psutil
+ python-pytest
+ python-pytest-mock
+ python-pytest-xdist-next))
+ (home-page "https://www.synapse.org")
+ (synopsis "Client for Synapse, a collaborative compute space")
+ (description
+ "This package provides a client for @code{Synapse}, a collaborative compute
+space that allows scientists to share and analyze data together.")
+ (license license:asl2.0)))
+
(define-public python-q
(package
(name "python-q")
base-commit: c4025af8c11c3e9ea0c2747b6c475c916fb61d80
--
2.38.1