`guix environment` performance issues

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3 participants

Lars-Dominik Braun
Ludovic Courtès
Maxim Cournoyer

Owner: unassigned

Submitted by: Lars-Dominik Braun

Severity: important

Merged with

48005

Debbugs page

Lars-Dominik Braun wrote on 4 Jun 2020 01:23

Recipients:(address . bug-guix@gnu.org)

Message-ID:20200604082316.GA3146@zpidnp36

Hi,

I’ve noticed that `guix environment` can be very very slow for some packages.

Whereas usually a call like

time guix environment --ad-hoc <package> -- true

takes 600ms to 1.5s, it takes 8.4s for the package r-learnr on my Ryzen 5 3600

with NVMe SSD, 32G of RAM and a warm cache. This seems to accumulate when

trying to install multiple unrelated “slow” packages into the same environment,

i.e. jupyter (2.9s) + r-rlearnr (8.4s) + r-stm (2.9s) = 12.1s. What these

packages seem to have in common is a deep chain of propagated inputs.

And in fact, if I create artificial test packages where test-999 propagates

test-998, test-998→test-997 and so on the command above takes 1m 9s. A single

package propagating 999 packages takes 4.5s.

Instrumenting guix-environment’s with-store call with statprof I see a lot of

time is spent in the garbage collector:

Total time: 24.672604202 seconds (19.431122691 seconds in GC)

./pre-inst-env guix environment --ad-hoc r-learnr -- true 25,18s user 0,24s system 308% cpu 8,248 total

More specifically in an anonymous function and reap-pipes, which is a gc hook,

I believe:

% cumulative self

time seconds seconds calls procedure

33.41 14.49 8.24 anon #xbb8480

27.95 6.90 6.90 ice-9/popen.scm:145:0:reap-pipes

4.37 1.08 1.08 anon #xbbdcd8

3.28 0.86 0.81 ice-9/vlist.scm:539:0:vhash-assq

2.40 2.37 0.59 guix/grafts.scm:202:22

Not sure if that helps tracking the issue down though.

Cheers,

Lars

PS: Here’s `guix describe`:

Generation 1 Jun 03 2020 10:38:17 (current)

guix 9ab2790

repository URL: https://git.savannah.gnu.org/git/guix.git

branch: master

commit: 9ab2790e2acf872c0f2cf41ec180de80d1eee3f3

zpid bab33c1

repository URL: https://github.com/leibniz-psychology/guix-zpid.git

branch: master

commit: bab33c19e0f0304d7aa82751653eb85d8cad8c0a

Ludovic Courtès wrote on 6 Jun 2020 07:34

control message for bug #41702

Recipients:(address . control@debbugs.gnu.org)

Message-ID:87sgf8tg9p.fsf@gnu.org

severity 41702 important

quit

Ludovic Courtès wrote on 6 Jun 2020 09:08

Re: bug#41702: `guix environment` performance issues

Recipients:(name . Lars-Dominik Braun)(address . ldb@leibniz-psychology.org)(address . 41702@debbugs.gnu.org)

Message-ID:87mu5gtbwg.fsf@gnu.org

Hi,

Lars-Dominik Braun <ldb@leibniz-psychology.org> skribis:

Toggle quote (14 lines)> Total time: 24.672604202 seconds (19.431122691 seconds in GC)
> ./pre-inst-env guix environment --ad-hoc r-learnr -- true  25,18s user 0,24s system 308% cpu 8,248 total
>
> More specifically in an anonymous function and reap-pipes, which is a gc hook,
> I believe:
>
> %     cumulative   self
> time   seconds    seconds   calls   procedure
>  33.41     14.49      8.24                            anon #xbb8480
>  27.95      6.90      6.90                            ice-9/popen.scm:145:0:reap-pipes
>   4.37      1.08      1.08                            anon #xbbdcd8
>   3.28      0.86      0.81                            ice-9/vlist.scm:539:0:vhash-assq
>   2.40      2.37      0.59                            guix/grafts.scm:202:22

Guile master has a fix for statprof that yields more useful info:

Toggle snippet (38 lines)scheme@(guile-user)> ,use(guix scripts environment)
scheme@(guile-user)> ,pr (guix-environment "--ad-hoc" "r-learnr" "--" "true")
%     cumulative   self             
time   seconds     seconds  procedure
84      9.87      6.16  append
56      4.04      4.04  %after-gc-thunk
85      1.87      1.42  ice-9/vlist.scm:539:0:vhash-assq
44      1.17      1.12  write
23      0.67      0.67  guix/derivations.scm:665:0:derivation->output-paths
82      0.58      0.58  string=?
42      2.37      0.50  guix/grafts.scm:202:22
42      0.50      0.50  list?
22      0.46      0.46  hashq
02      0.42      0.42  display
61     15.82      0.33  guix/grafts.scm:186:0:reference-origin
61      0.87      0.33  guix/grafts.scm:204:31
21      0.33      0.25  guix/derivations.scm:667:7
21      0.29      0.25  srfi/srfi-1.scm:817:0:any
01   1232.14      0.21  srfi/srfi-1.scm:584:5:map1
81      0.83      0.17  guix/derivations.scm:697:0:derivation/masked-inputs
81      0.75      0.17  srfi/srfi-1.scm:580:2:map
81      0.17      0.17  guix/derivations.scm:158:0:%derivation-input-derivation-procedure
60      0.17      0.12  reverse
60      0.12      0.12  hashq-ref
60      0.12      0.12  get-bytevector-n
60      0.12      0.12  procedure?
40      0.67      0.08  guix/packages.scm:1232:0:fold-bag-dependencies
40      0.12      0.08  string->utf8
40      0.12      0.08  ice-9/vlist.scm:534:0:vhash-assoc
40      0.12      0.08  ice-9/vlist.scm:449:0:vhash-cons
40      0.12      0.08  delete-duplicates
40      0.08      0.08  ice-9/boot-9.scm:1389:0:->bool
40      0.08      0.08  ice-9/boot-9.scm:2201:0:%load-announce
40      0.08      0.08  hash
40      0.08      0.08  guix/derivations.scm:665:0:derivation->output-paths
20     20.73      0.04  guix/gexp.scm:1061:2

Notice that the same command with ‘--no-grafts’ takes 2s instead of 11s.

The patch below arranges so that ‘cumulative-grafts’ processes

dependencies in a batch, such that the derivation’s dependency graph is

traversed once for all, which makes a difference for derivations with

lots of inputs.

Here’s the before/after comparison:

Toggle snippet (14 lines)

$ time guix environment --ad-hoc r-learnr --search-paths

export PATH="/gnu/store/n4wxbmqpafjfyawrla8xymzzdm5hxwph-profile/bin${PATH:+:}$PATH"

real 0m11.328s

user 0m20.155s

sys 0m0.172s

$ time ./pre-inst-env guix environment --ad-hoc r-learnr --search-paths

export PATH="/gnu/store/if6z77la3mx0qdzvcyl4qv9i5cyp48i0-profile/bin${PATH:+:}$PATH"

real 0m4.602s

user 0m6.189s

sys 0m0.136s

There’s still room for improvement, but it’s much better.

Ludo’.

Attachment: file

Ludovic Courtès wrote on 6 Jun 2020 14:40

Recipients:(name . Lars-Dominik Braun)(address . ldb@leibniz-psychology.org)(address . 41702@debbugs.gnu.org)

Message-ID:87d06bub30.fsf@gnu.org

Ludovic Courtès <ludo@gnu.org> skribis:

Toggle quote (5 lines)

> The patch below arranges so that ‘cumulative-grafts’ processes

> dependencies in a batch, such that the derivation’s dependency graph is

> traversed once for all, which makes a difference for derivations with

> lots of inputs.

Pushed:

https://git.savannah.gnu.org/cgit/guix.git/commit/?id=58bb833365db4e8934a386497d5b00a063cfd27d

Ludo’.

Lars-Dominik Braun wrote on 8 Jun 2020 02:04

Recipients:(name . Ludovic Courtès)(address . ludo@gnu.org)(address . 41702@debbugs.gnu.org)

Message-ID:20200608090453.GC3166@zpidnp36

Hi Ludo,

Toggle quote (14 lines)> --8<---------------cut here---------------start------------->8---
> $ time guix environment --ad-hoc r-learnr --search-paths
> export PATH="/gnu/store/n4wxbmqpafjfyawrla8xymzzdm5hxwph-profile/bin${PATH:+:}$PATH"
> 
> real	0m11.328s
> user	0m20.155s
> sys	0m0.172s
> $ time ./pre-inst-env guix environment --ad-hoc r-learnr --search-paths
> export PATH="/gnu/store/if6z77la3mx0qdzvcyl4qv9i5cyp48i0-profile/bin${PATH:+:}$PATH"
> 
> real	0m4.602s
> user	0m6.189s
> sys	0m0.136s
> --8<---------------cut here---------------end--------------->8---

that’s awesome and brings me much closer to my goal of running all applications
inside a `guix environment` container for reproducibility. Including the
protocol fixes from #41720 I’m now down to ~30s from ~50s, which may be called
somewhat usable. Obviously I’d be very interested in further speedups.

Thanks,
Lars

Ludovic Courtès wrote on 8 Jun 2020 14:59

Recipients:(name . Lars-Dominik Braun)(address . ldb@leibniz-psychology.org)(address . 41702@debbugs.gnu.org)

Message-ID:87k10hp6ba.fsf@gnu.org

Hi,

Lars-Dominik Braun <ldb@leibniz-psychology.org> skribis:

Toggle quote (19 lines)>> --8<---------------cut here---------------start------------->8---
>> $ time guix environment --ad-hoc r-learnr --search-paths
>> export PATH="/gnu/store/n4wxbmqpafjfyawrla8xymzzdm5hxwph-profile/bin${PATH:+:}$PATH"
>> 
>> real	0m11.328s
>> user	0m20.155s
>> sys	0m0.172s
>> $ time ./pre-inst-env guix environment --ad-hoc r-learnr --search-paths
>> export PATH="/gnu/store/if6z77la3mx0qdzvcyl4qv9i5cyp48i0-profile/bin${PATH:+:}$PATH"
>> 
>> real	0m4.602s
>> user	0m6.189s
>> sys	0m0.136s
>> --8<---------------cut here---------------end--------------->8---
> that’s awesome and brings me much closer to my goal of running all applications
> inside a `guix environment` container for reproducibility. Including the
> protocol fixes from #41720 I’m now down to ~30s from ~50s, which may be called
> somewhat usable. Obviously I’d be very interested in further speedups.

That’s over SSH, right?

Probably what’s killing us is the round-trip time for all these small

RPCs. We would need pipelining but the RPC protocol is not designed to

make that easy.

Perhaps you could “strace -Tt” the thing to check whether this

hypothesis is correct by looking at the time we spend waiting for

replies?

As for the CPU cost (i.e., going below the 4.6s above), we should keep

profiling just like you did.

Thanks,

Ludo’.

Lars-Dominik Braun wrote on 9 Jun 2020 02:15

Recipients:(name . Ludovic Courtès)(address . ludo@gnu.org)(address . 41702@debbugs.gnu.org)

Message-ID:20200609091522.GB8597@zpidnp36

Hey,

Toggle quote (1 lines)

> That’s over SSH, right?

correct, the worst possible case: Inside two VM’s on a Laptop, SSH transport

between them and /gnu+/var/guix on an NFS share (nfsd is in the same VM as

guix-daemon).

Toggle quote (3 lines)

> Probably what’s killing us is the round-trip time for all these small

> RPCs. We would need pipelining but the RPC protocol is not designed to

> make that easy.

That would have been my best guess too, but it does not seem to be the biggest
problem right now. Looking at the numbers again (both patches applied) with the
attached manifest[1], I see that:

---snip---
Local UNIX socket with and without --no-grafts:
    N           Min           Max        Median           Avg        Stddev
x  10          6.07          6.35         6.145          6.16    0.08232726
+  10         17.47         17.89        17.545        17.602    0.14351152
Difference at 99.0% confidence
        11.442 +/- 0.150576
        185.747% +/- 4.07133%

Local UNIX socket vs. guix://localhost transport:
    N           Min           Max        Median           Avg        Stddev
x  10         17.47         17.89        17.545        17.602    0.14351152
+  10         17.43          18.1         17.61        17.642    0.20131788
No difference proven at 99.0% confidence

Local UNIX socket vs ssh://localhost transport:
    N           Min           Max        Median           Avg        Stddev
x  10         17.47         17.89        17.545        17.602    0.14351152
+  10         33.46         35.27        34.315        34.359    0.53873205
Difference at 99.0% confidence
        16.757 +/- 0.5074
        95.1994% +/- 3.13957%
---snap---

So I would conclude:

1) Grafting still takes a lot of time and needs more work
2) Linux optimizes localhost networking pretty well
3) Our SSH transport is terribly slow

Moving to non-localhost communication between two VM’s:

---snip---
guix://localhost vs. guix://remote-host transport:
    N           Min           Max        Median           Avg        Stddev
x  10         17.43          18.1         17.61        17.642    0.20131788
+  10         20.88         22.58        21.095        21.222    0.49689704
Difference at 99.0% confidence
        3.58 +/- 0.487934
        20.2925% +/- 2.85159%

guix://remote-host vs. ssh://remote-host:
    N           Min           Max        Median           Avg        Stddev
x  10         20.88         22.58        21.095        21.222    0.49689704
+  10          30.1         32.56        31.005        31.093    0.70740606
Difference at 99.0% confidence
        9.871 +/- 0.786769
        46.5131% +/- 4.35326%
---snap---

Conclusion here is the same: Not alot of impact of networking/NFS and SSH
transport is still terribly slow. (Confusingly faster than localhost though.)

Toggle quote (3 lines)

> Perhaps you could “strace -Tt” the thing to check whether this

> hypothesis is correct by looking at the time we spend waiting for

> replies?

I’m not sure this will yield meaningful data for SSH, so I analyzet it for

guix://localhost vs. guix://remote-host. Takeaway is, yes, of course there is a

statistically significant difference and it’s about 40%±50%, which means this

method is pretty useless, because we can’t bin RPC’s by type.

So, I guess it would make sense for me to look at the SSH transport itself

again and see if there are any other low-hanging fruit. Not sure how much I can

help with profiling guile/guix itself. A different/better RPC protocol is

probably GSoC/v2.0-worthy?

Sorry for all the lengthy emails,

Lars

[1] You’ll need this channel: https://github.com/leibniz-psychology/guix-zpid

(specifications->manifest '( "coreutils" "findutils" "procps" "strace" "openssh" "mit-krb5" "bash" "which" "zip" "geeqie" "util-linux" "grep" "glibc" ;; for locales "glibc-locales" ;; front-end software "jupyter-zpid" "python-jupyterlab" ;; available notebook kernel ; provided by jupyter-zpid ;"python-ipykernel" "r-irkernel" "rstudio-server-zpid" "r" ;; for RMarkdown "r-knitr" "r-yaml" "r-markdown" "r-rmarkdown" "texlive" ;; commonly used r packages "r-psych" "r-ggplot2" "r-lattice" "r-foreign" "r-readr" "r-haven" "r-dplyr" "r-tidyr" "r-stringr" "r-forecast" "r-lme4" "r-nlme" "r-nnet" "r-glmnet" "r-caret" "r-xmisc" "r-splitstackshape" "r-tm" "r-quanteda" "r-topicmodels" "r-stm" ;;"r-parallel" "r-dt" "r-nlp" "r-data-table" "r-hmisc" "r-learnr" "r-metafor" ;; for rmarkdown "ghc-pandoc" ))

Ludovic Courtès wrote on 27 Jun 2020 14:20

Recipients:(name . Lars-Dominik Braun)(address . ldb@leibniz-psychology.org)(address . 41702@debbugs.gnu.org)

Message-ID:87wo3sjjdw.fsf@gnu.org

Hi,

Lars-Dominik Braun <ldb@leibniz-psychology.org> skribis:

Toggle quote (32 lines)> That would have been my best guess too, but it does not seem to be the biggest
> problem right now. Looking at the numbers again (both patches applied) with the
> attached manifest[1], I see that:
>
> ---snip---
> Local UNIX socket with and without --no-grafts:
>     N           Min           Max        Median           Avg        Stddev
> x  10          6.07          6.35         6.145          6.16    0.08232726
> +  10         17.47         17.89        17.545        17.602    0.14351152
> Difference at 99.0% confidence
>         11.442 +/- 0.150576
>         185.747% +/- 4.07133%
>
> Local UNIX socket vs. guix://localhost transport:
>     N           Min           Max        Median           Avg        Stddev
> x  10         17.47         17.89        17.545        17.602    0.14351152
> +  10         17.43          18.1         17.61        17.642    0.20131788
> No difference proven at 99.0% confidence
>
> Local UNIX socket vs ssh://localhost transport:
>     N           Min           Max        Median           Avg        Stddev
> x  10         17.47         17.89        17.545        17.602    0.14351152
> +  10         33.46         35.27        34.315        34.359    0.53873205
> Difference at 99.0% confidence
>         16.757 +/- 0.5074
>         95.1994% +/- 3.13957%
> ---snap---
>
> So I would conclude:
>
> 1) Grafting still takes a lot of time and needs more work

Yes, I noticed that there’s still redundant work being done, so we may

need global caching in addition to what

58bb833365db4e8934a386497d5b00a063cfd27d did.

Toggle quote (3 lines)

> 2) Linux optimizes localhost networking pretty well

> 3) Our SSH transport is terribly slow

Yes.

The patch below is a noticeable improvement for me. On my laptop,

GUIX_DAEMON_SOCKET=ssh://localhost ./pre-inst-env guix build libreoffice -n

goes from 5.8s to 3.3s. It just does the same thing as we do for

guix://.

Could you check what results it gives you?

Toggle quote (5 lines)

> So, I guess it would make sense for me to look at the SSH transport itself

> again and see if there are any other low-hanging fruit. Not sure how much I can

> help with profiling guile/guix itself. A different/better RPC protocol is

> probably GSoC/v2.0-worthy?

There’s a project to rewrite the daemon in Scheme, started by Caleb
Ristvedt (reepa) as part of GSoC a few years ago.  This could be an
opportunity to add a new version of the protocol that would support
pipelining.

Thanks,
Ludo’.

Toggle diff (86 lines)diff --git a/guix/ssh.scm b/guix/ssh.scm
index 2d7ca7d01d..a9312b7c8c 100644
--- a/guix/ssh.scm
+++ b/guix/ssh.scm
@@ -98,7 +98,7 @@ actual key does not match."
                                 key type))))))))
 
 (define* (open-ssh-session host #:key user port identity
-                           host-key
+                           host-key open-connection
                            (compression %compression)
                            (timeout 3600))
   "Open an SSH session for HOST and return it.  IDENTITY specifies the file
@@ -110,6 +110,10 @@ When HOST-KEY is true, it must be a string like \"ssh-ed25519 AAAAC3Nz…
 root@example.org\"; the server is authenticated and an error is raised if its
 host key is different from HOST-KEY.
 
+When OPEN-CONNECTION is true, it must be a two-argument procedure; it is
+passed HOST and PORT and must return a socket (a file port).  When
+OPEN-CONNECTION is false, Guile-SSH takes care of opening the connection.
+
 Install TIMEOUT as the maximum time in seconds after which a read or write
 operation on a channel of the returned session is considered as failing.
 
@@ -134,6 +138,13 @@ Throw an error on failure."
     ;; Honor ~/.ssh/config.
     (session-parse-config! session)
 
+    (when open-connection
+      (let* ((sock (open-connection host port)))
+        ;; Since 'session-set!' doesn't increase the revealed count of SOCK
+        ;; (as of Guile-SSH 0.12.0), do it ourselves.
+        (set-port-revealed! sock 1)
+        (session-set! session 'fd sock)))
+
     (match (connect! session)
       ('ok
        (if host-key
diff --git a/guix/store/ssh.scm b/guix/store/ssh.scm
index 09c0832505..d07f0d7467 100644
--- a/guix/store/ssh.scm
+++ b/guix/store/ssh.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2017 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2017, 2020 Ludovic Courtès <ludo@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -19,6 +19,7 @@
 (define-module (guix store ssh)
   #:use-module (guix ssh)
   #:use-module (web uri)
+  #:use-module (ssh session)
   #:export (connect-to-daemon))
 
 ;;; Commentary:
@@ -29,11 +30,27 @@
 ;;;
 ;;; End:
 
+(define (open-connection host port)
+  "Open a connection to HOST and PORT.  Use the standard SSH port if PORT is
+false."
+  (let* ((lst  (getaddrinfo host
+                            (if port (number->string port) "ssh")
+                            (if port AI_NUMERICSERV 0)))
+         (addr (addrinfo:addr (car lst)))
+         (sock (socket (sockaddr:fam addr) SOCK_STREAM 0)))
+    ;; Setting this option makes a dramatic difference because it avoids the
+    ;; "ACK delay" on our RPC messages.
+    (setsockopt sock IPPROTO_TCP TCP_NODELAY 1)
+
+    (connect sock addr)
+    sock))
+
 (define (connect-to-daemon uri)
   "Connect to the SSH daemon at URI, a URI object with the 'ssh' scheme."
   (remote-daemon-channel
    (open-ssh-session (uri-host uri)
                      #:port (or (uri-port uri) 22)
-                     #:user (uri-userinfo uri))))
+                     #:user (uri-userinfo uri)
+                     #:open-connection open-connection)))
 
 ;;; ssh.scm ends here

Ludovic Courtès wrote on 29 Jun 2020 13:55

control message for bug #41702

Recipients:(address . control@debbugs.gnu.org)

Message-ID:87pn9ha8wx.fsf@gnu.org

tags 41702 + patch

quit

Lars-Dominik Braun wrote on 30 Jun 2020 02:59

Re: bug#41702: `guix environment` performance issues

Recipients:(name . Ludovic Courtès)(address . ludo@gnu.org)(address . 41702@debbugs.gnu.org)

Message-ID:20200630095936.GA3630@zpidnp36

Hi Ludo,

Toggle quote (8 lines)> The patch below is a noticeable improvement for me.  On my laptop,
> 
>   GUIX_DAEMON_SOCKET=ssh://localhost ./pre-inst-env guix build libreoffice -n 
> 
> goes from 5.8s to 3.3s.  It just does the same thing as we do for
> guix://.
> 
> Could you check what results it gives you?

looking pretty good, comparing master without/with patch:

---snip---
    N           Min           Max        Median           Avg        Stddev
x  10         16.87         20.77         17.44        17.802     1.1228515
+  10          9.92         13.67         10.19        10.569     1.1254574
Difference at 99.0% confidence
        -7.233 +/- 1.44688
        -40.6303% +/- 6.68735%
---snap---

Toggle quote (4 lines)

> There’s a project to rewrite the daemon in Scheme, started by Caleb

> Ristvedt (reepa) as part of GSoC a few years ago. This could be an

> opportunity to add a new version of the protocol that would support

> pipelining.

Given how much improvement you’ve achieved so far I’d say we can (for now)

probably get away with the current protocol. Still, what’s the status of this

daemon?

Lars

Ludovic Courtès wrote on 1 Jul 2020 03:49

Recipients:(name . Lars-Dominik Braun)(address . ldb@leibniz-psychology.org)(address . 41702@debbugs.gnu.org)

Message-ID:87y2o3zf00.fsf@gnu.org

Hi,

Ludovic Courtès <ludo@gnu.org> skribis:

Toggle quote (7 lines)

> + (when open-connection

> + (let* ((sock (open-connection host port)))

> + ;; Since 'session-set!' doesn't increase the revealed count of SOCK

> + ;; (as of Guile-SSH 0.12.0), do it ourselves.

> + (set-port-revealed! sock 1)

> + (session-set! session 'fd sock)))

The problem with this approach is that ‘open-connection’ is past the raw

host name; aliases, proxy commands, etc. from ~/.ssh/config are ignored.

So it cannot go in as is. :-/

What we need is Guile-SSH bindings for ‘ssh_get_fd’, which would allow

us to get at the actual file descriptor after the connection has been

opened, and to set TCP_NODELAY there:

http://api.libssh.org/stable/group__libssh__session.html#gafe509fcea47714b5cd277d1e35e83276

It’s not 100% clear though if it returns that “right” FD when there’s a

proxy command.

Ludo’.

Lars-Dominik Braun wrote on 1 Jul 2020 04:24

Recipients:(name . Ludovic Courtès)(address . ludo@gnu.org)(address . 41702@debbugs.gnu.org)

Message-ID:20200701112453.GB25179@zpidnp36

Hey,

Toggle quote (8 lines)> What we need is Guile-SSH bindings for ‘ssh_get_fd’, which would allow
> us to get at the actual file descriptor after the connection has been
> opened, and to set TCP_NODELAY there:
> 
>   http://api.libssh.org/stable/group__libssh__session.html#gafe509fcea47714b5cd277d1e35e83276
> 
> It’s not 100% clear though if it returns that “right” FD when there’s a
> proxy command.

wouldn’t it be easier to add the SSH_OPTIONS_NODELAY option (see [1]) to

guile-ssh (should be trivial[2]) and let guile-ssh handle all the connection

stuff without touching the socket? Or do we need the raw socket elsewhere?

Cheers,

Lars

[1] http://api.libssh.org/stable/group__libssh__session.html#ga7a801b85800baa3f4e16f5b47db0a73d

[2] https://github.com/artyom-poptsov/guile-ssh/blob/master/libguile-ssh/session-func.c#L52

Ludovic Courtès wrote on 1 Jul 2020 14:53

Recipients:(name . Lars-Dominik Braun)(address . ldb@leibniz-psychology.org)(address . 41702@debbugs.gnu.org)

Message-ID:87eepuyk99.fsf@gnu.org

Hi,

Lars-Dominik Braun <ldb@leibniz-psychology.org> skribis:

Toggle quote (12 lines)>> What we need is Guile-SSH bindings for ‘ssh_get_fd’, which would allow
>> us to get at the actual file descriptor after the connection has been
>> opened, and to set TCP_NODELAY there:
>> 
>>   http://api.libssh.org/stable/group__libssh__session.html#gafe509fcea47714b5cd277d1e35e83276
>> 
>> It’s not 100% clear though if it returns that “right” FD when there’s a
>> proxy command.
> wouldn’t it be easier to add the SSH_OPTIONS_NODELAY option (see [1]) to
> guile-ssh (should be trivial[2]) and let guile-ssh handle all the connection
> stuff without touching the socket? Or do we need the raw socket elsewhere?

Good idea, I had overlooked that possibility.

Would you like to send them a patch?

Thanks,

Ludo’.

Lars-Dominik Braun wrote on 2 Jul 2020 00:00

Recipients:(name . Ludovic Courtès)(address . ludo@gnu.org)(address . 41702@debbugs.gnu.org)

Message-ID:20200702070000.GA4532@zpidnp36

Hi,

Toggle quote (1 lines)

> Would you like to send them a patch?

done: https://github.com/artyom-poptsov/guile-ssh/pull/21

Cheers,

Lars

Lars-Dominik Braun wrote on 2 Jul 2020 05:03

Recipients:(name . Ludovic Courtès)(address . ludo@gnu.org)(address . 41702@debbugs.gnu.org)

Message-ID:20200702120333.GB4532@zpidnp36

Hi (again),

and the attached patch uses the new nodelay option, if we don’t want to wait

for another guile-ssh release.

Lars

Attachment: 0001-guix-Add-nodelay-to-SSH-store-connection.patch

Ludovic Courtès wrote on 6 Jul 2020 01:49

Recipients:(name . Lars-Dominik Braun)(address . ldb@leibniz-psychology.org)(address . 41702@debbugs.gnu.org)

Message-ID:87k0zhkoyf.fsf@gnu.org

Hi,

Lars-Dominik Braun <ldb@leibniz-psychology.org> skribis:

Toggle quote (3 lines)

> and the attached patch uses the new nodelay option, if we don’t want to wait

> for another guile-ssh release.

I’d rather wait; perhaps you can ask Artyom whether they’re planning for

a new release soonish?

If there’s no plan for a release within two weeks, we can go ahead with

the patch you propose.

Toggle quote (10 lines)> From 2892f79f819dd2dd9420f7e74bcb6e293d377452 Mon Sep 17 00:00:00 2001
> From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
> Date: Thu, 2 Jul 2020 13:59:51 +0200
> Subject: [PATCH] guix: Add nodelay to SSH store connection
>
> * gnu/packages/ssh.scm (guile-ssh)[patches]: Add patch.
> * gnu/packages/patches/guile-ssh-0.12.0-nodelay.patch: New file.
> * gnu/local.mk (dist_patch_DATA): Add it.
> * guix/ssh.scm (open-ssh-session): Use new nodelay option.

If we take this route, the two patches (guile-ssh changes, then (guix

ssh) changes) should be separate.

Also #:nodelay will cause a hard failure for people using an older

Guile-SSH. I wonder how to guard against that; configure check, or

run-time Guile-SSH version check?

Toggle quote (2 lines)

> +++ b/gnu/packages/patches/guile-ssh-0.12.0-nodelay.patch

It would be good to include the URL of the upstream issue

Thanks!

Ludo’.

Lars-Dominik Braun wrote on 6 Jul 2020 05:58

Recipients:(name . Ludovic Courtès)(address . ludo@gnu.org)(address . 41702@debbugs.gnu.org)

Message-ID:20200706125800.GA3176@zpidnp36

Hi Ludo,

Toggle quote (2 lines)

> I’d rather wait; perhaps you can ask Artyom whether they’re planning for

> a new release soonish?

“I'll see if I can fix some random test failures with Guile 2.2 that sometimes

occur, and then I'll prepare a new release.”

Toggle quote (2 lines)

> If there’s no plan for a release within two weeks, we can go ahead with

> the patch you propose.

Alright, I’ll prepare a new patch if either of the two events happen.

Cheers,

Lars

Lars-Dominik Braun wrote on 20 Jul 2020 02:50

Recipients:(name . Ludovic Courtès)(address . ludo@gnu.org)(address . 41702@debbugs.gnu.org)

Message-ID:20200720095059.GB3143@zpidnp36

Hi Ludo,

a new version has been released, so here is the updated patchset. I’m not sure

if it’s possible to make the #:nodelay optional somehow, i.e. retaining

compatibility with guile-ssh<0.13.0. For now there’s a hard feature check.

Lars

From 42ff75c9d4da4eb2aeece96119ae5a65a9ccac82 Mon Sep 17 00:00:00 2001

* gnu/packages/ssh.scm (guile-ssh): Update to 0.13.0.

---

gnu/packages/ssh.scm | 4 ++--

1 file changed, 2 insertions(+), 2 deletions(-)

Toggle diff (24 lines)diff --git a/gnu/packages/ssh.scm b/gnu/packages/ssh.scm
index a612b9dd15..50316ea1be 100644
--- a/gnu/packages/ssh.scm
+++ b/gnu/packages/ssh.scm
@@ -297,7 +297,7 @@ Additionally, various channel-specific options can be negotiated.")
 (define-public guile-ssh
   (package
     (name "guile-ssh")
-    (version "0.12.0")
+    (version "0.13.0")
     (home-page "https://github.com/artyom-poptsov/guile-ssh")
     (source (origin
               (method git-fetch)
@@ -307,7 +307,7 @@ Additionally, various channel-specific options can be negotiated.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "054hd9rzfhb48gc1hw3rphhp0cnnd4bs5qmidy5ygsyvy9ravlad"))
+                "1q96h98p6x7ah6nc0d2wfx503fmsj36riv9ka9s79z3lzwaf0k26"))
               (modules '((guix build utils)))))
     (build-system gnu-build-system)
     (outputs '("out" "debug"))
-- 
2.20.1

From 6a18c9a4533075d1ee9795777a998fde3e64030f Mon Sep 17 00:00:00 2001

See issue #41702

* guix/ssh.scm (open-ssh-session): Enable #:nodelay.

* m4/guix.m4 (GUIX_CHECK_GUILE_SSH): Add feature check for this new parameter.

---

guix/ssh.scm | 5 ++++-

m4/guix.m4 | 6 ++++--

2 files changed, 8 insertions(+), 3 deletions(-)

Toggle diff (41 lines)diff --git a/guix/ssh.scm b/guix/ssh.scm
index 2d7ca7d01d..3bffb0b525 100644
--- a/guix/ssh.scm
+++ b/guix/ssh.scm
@@ -129,7 +129,10 @@ Throw an error on failure."
                                ;; We need lightweight compression when
                                ;; exchanging full archives.
                                #:compression compression
-                               #:compression-level 3)))
+                               #:compression-level 3
+
+                               ;; Speed up RPC.
+                               #:nodelay #t)))
 
     ;; Honor ~/.ssh/config.
     (session-parse-config! session)
diff --git a/m4/guix.m4 b/m4/guix.m4
index 7c27ae74df..cce03045db 100644
--- a/m4/guix.m4
+++ b/m4/guix.m4
@@ -142,14 +142,16 @@ dnl GUIX_CHECK_GUILE_SSH
 dnl
 dnl Check whether a recent-enough Guile-SSH is available.
 AC_DEFUN([GUIX_CHECK_GUILE_SSH], [
-  dnl Check whether 'userauth-gssapi!' (introduced in 0.12.0) is present.
+  dnl Check whether '#:nodelay' paramater to 'make-session' (introduced in
+  dnl 0.13.0) is present.
   AC_CACHE_CHECK([whether Guile-SSH is available and recent enough],
     [guix_cv_have_recent_guile_ssh],
     [GUILE_CHECK([retval],
       [(and (@ (ssh channel) channel-send-eof)
             (@ (ssh popen) open-remote-pipe)
             (@ (ssh dist node) node-eval)
-            (@ (ssh auth) userauth-gssapi!))])
+            (@ (ssh auth) userauth-gssapi!)
+            ((@ (ssh session) make-session) #:nodelay #t))])
      if test "$retval" = 0; then
        guix_cv_have_recent_guile_ssh="yes"
      else
-- 
2.20.1

Ludovic Courtès wrote on 20 Jul 2020 14:51

Recipients:(name . Lars-Dominik Braun)(address . ldb@leibniz-psychology.org)(address . 41702@debbugs.gnu.org)

Message-ID:87mu3tq2hh.fsf@gnu.org

Hi Lars,

Lars-Dominik Braun <ldb@leibniz-psychology.org> skribis:

Toggle quote (7 lines)

> From 42ff75c9d4da4eb2aeece96119ae5a65a9ccac82 Mon Sep 17 00:00:00 2001

> From: Lars-Dominik Braun <ldb@leibniz-psychology.org>

> Date: Mon, 20 Jul 2020 11:27:35 +0200

> Subject: [PATCH 1/2] gnu: guile-ssh: Update to 0.13.0.

> * gnu/packages/ssh.scm (guile-ssh): Update to 0.13.0.

[...]

Toggle quote (10 lines)> From 6a18c9a4533075d1ee9795777a998fde3e64030f Mon Sep 17 00:00:00 2001
> From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
> Date: Mon, 20 Jul 2020 11:28:51 +0200
> Subject: [PATCH 2/2] guix: Speed up RPC via SSH connections.
>
> See issue #41702
>
> * guix/ssh.scm (open-ssh-session): Enable #:nodelay.
> * m4/guix.m4 (GUIX_CHECK_GUILE_SSH): Add feature check for this new parameter.

I adjusted the commit log and pushed.

I think it’s okay to use the new Guile-SSH feature right away because

it’s not central, and ‘guix pull’ gives people the ability to get the

new Guile-SSH version.

Thanks!

Ludo’.

Maxim Cournoyer wrote on 22 Oct 2020 14:03

Recipients:(name . Ludovic Courtès)(address . ludo@gnu.org)

Message-ID:87r1pqc6sy.fsf@gmail.com

Hello,

Ludovic Courtès <ludo@gnu.org> writes:

Toggle quote (29 lines)> Hi Lars,
>
> Lars-Dominik Braun <ldb@leibniz-psychology.org> skribis:
>
>> From 42ff75c9d4da4eb2aeece96119ae5a65a9ccac82 Mon Sep 17 00:00:00 2001
>> From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
>> Date: Mon, 20 Jul 2020 11:27:35 +0200
>> Subject: [PATCH 1/2] gnu: guile-ssh: Update to 0.13.0.
>>
>> * gnu/packages/ssh.scm (guile-ssh): Update to 0.13.0.
>
> [...]
>
>> From 6a18c9a4533075d1ee9795777a998fde3e64030f Mon Sep 17 00:00:00 2001
>> From: Lars-Dominik Braun <ldb@leibniz-psychology.org>
>> Date: Mon, 20 Jul 2020 11:28:51 +0200
>> Subject: [PATCH 2/2] guix: Speed up RPC via SSH connections.
>>
>> See issue #41702
>>
>> * guix/ssh.scm (open-ssh-session): Enable #:nodelay.
>> * m4/guix.m4 (GUIX_CHECK_GUILE_SSH): Add feature check for this new parameter.
>
> I adjusted the commit log and pushed.
>
> I think it’s okay to use the new Guile-SSH feature right away because
> it’s not central, and ‘guix pull’ gives people the ability to get the
> new Guile-SSH version.

Judging from the above, it seems this issue has been resolved.

Closing.

Thank you,

Maxim

Closed

Lars-Dominik Braun wrote on 23 Oct 2020 00:26

Recipients:(name . Maxim Cournoyer)(address . maxim.cournoyer@gmail.com)

Message-ID:20201023072621.GA3115@zpidnp36

Hi Maxim,

Toggle quote (1 lines)

> Judging from the above, it seems this issue has been resolved.

grafting is still a performance issue imo. Compare for example:

$ time guix environment --ad-hoc --search-paths r-learnr

guix environment --ad-hoc --search-paths r-learnr 5,90s user 0,09s system 210% cpu 2,844 total

$ time guix environment --ad-hoc --search-paths r-learnr --no-grafts

guix environment --ad-hoc --search-paths r-learnr --no-grafts 2,03s user 0,08s system 164% cpu 1,277 total

Cheers,

Lars

Closed

Ludovic Courtès wrote on 23 Oct 2020 07:51

Recipients:(name . Lars-Dominik Braun)(address . ldb@leibniz-psychology.org)

Message-ID:873625ngg9.fsf@gnu.org

Hi,

Lars-Dominik Braun <ldb@leibniz-psychology.org> skribis:

Toggle quote (2 lines)

> grafting is still a performance issue imo. Compare for example:

Agreed. The fix in 58bb833365db4e8934a386497d5b00a063cfd27d is

incomplete: we’re still potentially doing things several times.

Toggle quote (5 lines)

> $ time guix environment --ad-hoc --search-paths r-learnr

> guix environment --ad-hoc --search-paths r-learnr 5,90s user 0,09s system 210% cpu 2,844 total

> $ time guix environment --ad-hoc --search-paths r-learnr --no-grafts

> guix environment --ad-hoc --search-paths r-learnr --no-grafts 2,03s user 0,08s system 164% cpu 1,277 total

Here’s what I get over a local socket:

Toggle snippet (14 lines)

ludo@ribbon ~/src/guix$ time guix environment --ad-hoc --search-paths r-learnr --no-grafts

export PATH="/gnu/store/wkhd1fnmg1q30g21bfn5jprz24m041w6-profile/bin${PATH:+:}$PATH"

real 0m1.790s

user 0m1.928s

sys 0m0.102s

ludo@ribbon ~/src/guix$ time guix environment --ad-hoc --search-paths r-learnr

export PATH="/gnu/store/pwzrpzdbli2561f2yq70kljywn93h5w6-profile/bin${PATH:+:}$PATH"

real 0m3.820s

user 0m4.954s

sys 0m0.105s

Ludo’.

Closed

Ludovic Courtès wrote on 23 Oct 2020 07:52

control message for bug #41702

Recipients:(address . control@debbugs.gnu.org)

Message-ID:871rhpngf9.fsf@gnu.org

reopen 41702
tags 41702 - fixed patch
quit

Ludovic Courtès wrote on 27 May 2021 09:32

Recipients:(address . control@debbugs.gnu.org)

Message-ID:87wnrkjfwv.fsf@gnu.org

merge 41702 48005

quit

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